Tuesday 12 August 2014

errors while installing rstudio on Ubuntu 14.0.4



Install sudo apt-get install r-base and then launch rsudio from the bin folder

Error while installing xlsx package:

First install rJava which is a dependent for xlsx

sudo apt-get install r-cran-rjava

Error while loading xml package:

> install.packages("XML")
Installing package into ‘/home/bala/R/x86_64-pc-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)
trying URL 'http://cran.rstudio.com/src/contrib/XML_3.98-1.1.tar.gz'
Content type 'application/x-gzip' length 1582216 bytes (1.5 Mb)
opened URL
==================================================
downloaded 1.5 Mb

* installing *source* package ‘XML’ ...
** package ‘XML’ successfully unpacked and MD5 sums checked
checking for gcc... gcc
checking for C compiler default output file name... 
rm: cannot remove 'a.out.dSYM': Is a directory
a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for sed... /bin/sed
checking for pkg-config... /usr/bin/pkg-config
checking for xml2-config... no
Cannot find xml2-config
ERROR: configuration failed for package ‘XML’
* removing ‘/home/bala/R/x86_64-pc-linux-gnu-library/3.0/XML’
Warning in install.packages :
  installation of package ‘XML’ had non-zero exit status

The downloaded source packages are in
 ‘/tmp/RtmpcGhePy/downloaded_packages’
>



Fix: Run the following command

sudo apt-get update

sudo apt-get install libxml2-dev
sudo apt-get install r-cran-xml

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